MERS-CoV spillover at the camel-human interface
Identifieur interne : 006732 ( Main/Exploration ); précédent : 006731; suivant : 006733MERS-CoV spillover at the camel-human interface
Auteurs : Gytis Dudas [États-Unis] ; Luiz Max Carvalho [Royaume-Uni] ; Andrew Rambaut [Royaume-Uni, États-Unis] ; Trevor Bedford [États-Unis]Source :
- eLife [ 2050-084X ] ; ????.
Abstract
Middle East respiratory syndrome coronavirus (MERS-CoV) is a zoonotic virus from camels causing significant mortality and morbidity in humans in the Arabian Peninsula. The epidemiology of the virus remains poorly understood, and while case-based and seroepidemiological studies have been employed extensively throughout the epidemic, viral sequence data have not been utilised to their full potential. Here, we use existing MERS-CoV sequence data to explore its phylodynamics in two of its known major hosts, humans and camels. We employ structured coalescent models to show that long-term MERS-CoV evolution occurs exclusively in camels, whereas humans act as a transient, and ultimately terminal host. By analysing the distribution of human outbreak cluster sizes and zoonotic introduction times, we show that human outbreaks in the Arabian peninsula are driven by seasonally varying zoonotic transfer of viruses from camels. Without heretofore unseen evolution of host tropism, MERS-CoV is unlikely to become endemic in humans.
Url:
DOI: 10.7554/eLife.31257
PubMed: 29336306
PubMed Central: 5777824
Affiliations:
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The epidemiology of the virus remains poorly understood, and while case-based and seroepidemiological studies have been employed extensively throughout the epidemic, viral sequence data have not been utilised to their full potential. Here, we use existing MERS-CoV sequence data to explore its phylodynamics in two of its known major hosts, humans and camels. We employ structured coalescent models to show that long-term MERS-CoV evolution occurs exclusively in camels, whereas humans act as a transient, and ultimately terminal host. By analysing the distribution of human outbreak cluster sizes and zoonotic introduction times, we show that human outbreaks in the Arabian peninsula are driven by seasonally varying zoonotic transfer of viruses from camels. 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Kühnert</name></author><author><name sortKey="Popinga, A" uniqKey="Popinga A">A Popinga</name></author><author><name sortKey="Welch, D" uniqKey="Welch D">D Welch</name></author><author><name sortKey="Drummond, Aj" uniqKey="Drummond A">AJ Drummond</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Volz, Em" uniqKey="Volz E">EM Volz</name></author><author><name sortKey="Koelle, K" uniqKey="Koelle K">K Koelle</name></author><author><name sortKey="Bedford, T" uniqKey="Bedford T">T Bedford</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Volz, Em" uniqKey="Volz E">EM Volz</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wernery, U" uniqKey="Wernery U">U Wernery</name></author><author><name sortKey="Corman, Vm" uniqKey="Corman V">VM Corman</name></author><author><name sortKey="Wong, Ey" uniqKey="Wong E">EY Wong</name></author><author><name sortKey="Tsang, Ak" uniqKey="Tsang A">AK Tsang</name></author><author><name sortKey="Muth, D" uniqKey="Muth D">D Muth</name></author><author><name sortKey="Lau, Sk" uniqKey="Lau S">SK Lau</name></author><author><name sortKey="Khazanehdari, K" uniqKey="Khazanehdari K">K Khazanehdari</name></author><author><name sortKey="Zirkel, F" uniqKey="Zirkel F">F Zirkel</name></author><author><name sortKey="Ali, M" uniqKey="Ali M">M Ali</name></author><author><name sortKey="Nagy, P" uniqKey="Nagy P">P Nagy</name></author><author><name sortKey="Juhasz, J" uniqKey="Juhasz J">J Juhasz</name></author><author><name sortKey="Wernery, R" uniqKey="Wernery R">R Wernery</name></author><author><name sortKey="Joseph, S" uniqKey="Joseph S">S Joseph</name></author><author><name sortKey="Syriac, G" uniqKey="Syriac G">G Syriac</name></author><author><name sortKey="Elizabeth, Sk" uniqKey="Elizabeth S">SK Elizabeth</name></author><author><name sortKey="Patteril, Na" uniqKey="Patteril N">NA Patteril</name></author><author><name sortKey="Woo, Pc" uniqKey="Woo P">PC Woo</name></author><author><name sortKey="Drosten, C" uniqKey="Drosten C">C Drosten</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wernery, U" uniqKey="Wernery U">U Wernery</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Xie, Q" uniqKey="Xie Q">Q Xie</name></author><author><name sortKey="Cao, Y" uniqKey="Cao Y">Y Cao</name></author><author><name sortKey="Su, J" uniqKey="Su J">J Su</name></author><author><name sortKey="Wu, X" uniqKey="Wu X">X Wu</name></author><author><name sortKey="Wan, C" uniqKey="Wan C">C Wan</name></author><author><name sortKey="Ke, C" uniqKey="Ke C">C Ke</name></author><author><name sortKey="Zhao, W" uniqKey="Zhao W">W Zhao</name></author><author><name sortKey="Zhang, B" uniqKey="Zhang B">B Zhang</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Yang, Z" uniqKey="Yang Z">Z Yang</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zaki, Am" uniqKey="Zaki A">AM Zaki</name></author><author><name sortKey="Van Boheemen, S" uniqKey="Van Boheemen S">S van Boheemen</name></author><author><name sortKey="Bestebroer, Tm" uniqKey="Bestebroer T">TM Bestebroer</name></author><author><name sortKey="Osterhaus, Ad" uniqKey="Osterhaus A">AD Osterhaus</name></author><author><name sortKey="Fouchier, Ra" uniqKey="Fouchier R">RA Fouchier</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zhang, Z" uniqKey="Zhang Z">Z Zhang</name></author><author><name sortKey="Shen, L" uniqKey="Shen L">L Shen</name></author><author><name sortKey="Gu, X" uniqKey="Gu X">X Gu</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Royaume-Uni</li><li>États-Unis</li></country></list><tree><country name="États-Unis"><noRegion><name sortKey="Dudas, Gytis" sort="Dudas, Gytis" uniqKey="Dudas G" first="Gytis" last="Dudas">Gytis Dudas</name></noRegion><name sortKey="Bedford, Trevor" sort="Bedford, Trevor" uniqKey="Bedford T" first="Trevor" last="Bedford">Trevor Bedford</name><name sortKey="Rambaut, Andrew" sort="Rambaut, Andrew" uniqKey="Rambaut A" first="Andrew" last="Rambaut">Andrew Rambaut</name></country><country name="Royaume-Uni"><noRegion><name sortKey="Carvalho, Luiz Max" sort="Carvalho, Luiz Max" uniqKey="Carvalho L" first="Luiz Max" last="Carvalho">Luiz Max Carvalho</name></noRegion><name sortKey="Rambaut, Andrew" sort="Rambaut, Andrew" uniqKey="Rambaut A" first="Andrew" last="Rambaut">Andrew Rambaut</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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